This is ridiculous. I just opened the program and since Ringtones are the only things on my iPhone right now, Copy Trans assumes EVERYTHING I put in is a ringtone. There are no instructions that I can find for creating a new category and dragging my music into it from my computer.
Thank you for your suggestion! Please make sure you change the album artwork after the tracks were copied to device. Transfer the tracks first, apply the changes by pressing "Update" and then go ahead and change the artwork to your liking.